Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs74036727 chr14:24420427 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs74036728 chr14:24421664 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs74036729 chr14:24421676 T/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs74295117 chr5:156994533 C/T 8.35E-6 491 21.6 24.03 8.03 KM Plot
LGG rs74334754 chr5:169058581 C/T 1.91E-8 499 21.85 23.85 6.83 KM Plot
LGG rs7446481 chr5:169047915 A/G 1.57E-8 506 22.12 24.07 6.83 KM Plot
LGG rs74513657 chr3:53336459 A/G 5.09E-8 504 21.7 26.5 10.97 KM Plot
LGG rs74663205 chr6:53114417 T/C 2.22E-5 504 22.37 22.08 14.8 KM Plot
LGG rs74705698 chr6:53171621 C/T 2.5E-5 509 22.6 21.6 14.8 KM Plot
LGG rs74755693 chr9:37951859 A/G 8.12E-7 504 22.78 20.55 5.03 KM Plot
LGG rs74837327 chr5:157005259 G/C 4.04E-6 485 21.78 24.28 8.03 KM Plot
LGG rs74857389 chr5:168976149 C/G 1.43E-8 509 21.87 24.07 6.83 KM Plot
LGG rs74858098 chr18:72052207 A/C 7.1E-5 509 22.6 22.75 6.7 KM Plot
LGG rs74910958 chr8:6184515 A/G 2.29E-5 498 21.87 24.03 7.72 KM Plot
LGG rs7498727 chr16:8711548 T/C 2.17E-7 502 8.17 17.2 24.05 KM Plot